Expand description
Python bindings for spike-train and neural-signal analysis.
Functionsยง
- __
pyfunction_ ๐ โpy_ adaptive_ spike_ distance - __
pyfunction_ ๐ โpy_ amplitude_ cutoff - __
pyfunction_ ๐ โpy_ approximate_ entropy - __
pyfunction_ ๐ โpy_ autocorrelation_ time - __
pyfunction_ ๐ โpy_ bayesian_ decode - __
pyfunction_ ๐ โpy_ bin_ spike_ train - __
pyfunction_ ๐ โpy_ burst_ detection - __
pyfunction_ ๐ โpy_ cell_ assembly_ detection - __
pyfunction_ ๐ โpy_ change_ point_ detection - __
pyfunction_ ๐ โpy_ coincidence_ index - __
pyfunction_ ๐ โpy_ compound_ poisson_ process - __
pyfunction_ ๐ โpy_ conditional_ granger_ causality - __
pyfunction_ ๐ โpy_ conditional_ intensity - __
pyfunction_ ๐ โpy_ covariance_ matrix - __
pyfunction_ ๐ โpy_ cross_ correlation - __
pyfunction_ ๐ โpy_ cubic_ higher_ order - __
pyfunction_ ๐ โpy_ cv2 - __
pyfunction_ ๐ โpy_ cv_ isi - __
pyfunction_ ๐ โpy_ d_ prime - __
pyfunction_ ๐ โpy_ demixed_ components - __
pyfunction_ ๐ โpy_ demixed_ pca - __
pyfunction_ ๐ โpy_ directed_ transfer_ function - __
pyfunction_ ๐ โpy_ drift_ metric - __
pyfunction_ ๐ โpy_ earth_ movers_ distance - __
pyfunction_ ๐ โpy_ event_ synchronization - __
pyfunction_ ๐ โpy_ factor_ analysis - __
pyfunction_ ๐ โpy_ factor_ loadings - __
pyfunction_ ๐ โpy_ fano_ factor - __
pyfunction_ ๐ โpy_ firing_ rate - __
pyfunction_ ๐ โpy_ first_ spike_ latency - __
pyfunction_ ๐ โpy_ functional_ connectivity - __
pyfunction_ ๐ โpy_ gamma_ process - __
pyfunction_ ๐ โpy_ gaussian_ attention - __
pyfunction_ ๐ โpy_ gpfa - __
pyfunction_ ๐ โpy_ gpfa_ em - __
pyfunction_ ๐ โpy_ gpfa_ transform - __
pyfunction_ ๐ โpy_ homogeneous_ poisson - __
pyfunction_ ๐ โpy_ hunter_ milton_ similarity - __
pyfunction_ ๐ โpy_ hurst_ exponent - __
pyfunction_ ๐ โpy_ infonce_ loss - __
pyfunction_ ๐ โpy_ instantaneous_ rate - __
pyfunction_ ๐ โpy_ isi - __
pyfunction_ ๐ โpy_ isi_ distance - __
pyfunction_ ๐ โpy_ isi_ hazard_ function - __
pyfunction_ ๐ โpy_ isi_ profile - __
pyfunction_ ๐ โpy_ isi_ survivor_ function - __
pyfunction_ ๐ โpy_ isi_ violation_ rate - __
pyfunction_ ๐ โpy_ isolation_ distance - __
pyfunction_ ๐ โpy_ joint_ psth - __
pyfunction_ ๐ โpy_ kozachenko_ leonenko_ mi - __
pyfunction_ ๐ โpy_ l_ ratio - __
pyfunction_ ๐ โpy_ lempel_ ziv_ complexity - __
pyfunction_ ๐ โpy_ linear_ discriminant_ decode - __
pyfunction_ ๐ โpy_ local_ variation - __
pyfunction_ ๐ โpy_ maximum_ likelihood_ decode - __
pyfunction_ ๐ โpy_ multi_ neuron_ victor_ purpura - __
pyfunction_ ๐ โpy_ mutual_ information - __
pyfunction_ ๐ โpy_ naive_ bayes_ decode - __
pyfunction_ ๐ โpy_ nn_ hit_ rate - __
pyfunction_ ๐ โpy_ noise_ correlation - __
pyfunction_ ๐ โpy_ noise_ entropy - __
pyfunction_ ๐ โpy_ pairwise_ correlation - __
pyfunction_ ๐ โpy_ pairwise_ granger_ causality - __
pyfunction_ ๐ โpy_ partial_ directed_ coherence - __
pyfunction_ ๐ โpy_ pca_ components - __
pyfunction_ ๐ โpy_ permutation_ entropy - __
pyfunction_ ๐ โpy_ phase_ locking_ value - __
pyfunction_ ๐ โpy_ place_ field_ detection - __
pyfunction_ ๐ โpy_ population_ vector_ decode - __
pyfunction_ ๐ โpy_ power_ spectrum - __
pyfunction_ ๐ โpy_ presence_ ratio - __
pyfunction_ ๐ โpy_ psth - __
pyfunction_ ๐ โpy_ renewal_ density - __
pyfunction_ ๐ โpy_ response_ onset - __
pyfunction_ ๐ โpy_ sample_ entropy - __
pyfunction_ ๐ โpy_ scaled_ dot_ product_ attention - __
pyfunction_ ๐ โpy_ schreiber_ similarity - __
pyfunction_ ๐ โpy_ signal_ correlation - __
pyfunction_ ๐ โpy_ silhouette_ score - __
pyfunction_ ๐ โpy_ sinusoidal_ position_ encode - __
pyfunction_ ๐ โpy_ snr - __
pyfunction_ ๐ โpy_ spade_ detect - __
pyfunction_ ๐ โpy_ spatial_ information - __
pyfunction_ ๐ โpy_ spectral_ granger_ causality - __
pyfunction_ ๐ โpy_ spike_ count - __
pyfunction_ ๐ โpy_ spike_ count_ covariance - __
pyfunction_ ๐ โpy_ spike_ directionality - __
pyfunction_ ๐ โpy_ spike_ distance - __
pyfunction_ ๐ โpy_ spike_ distance_ matrix - __
pyfunction_ ๐ โpy_ spike_ field_ coherence - __
pyfunction_ ๐ โpy_ spike_ phase_ histogram - __
pyfunction_ ๐ โpy_ spike_ profile - __
pyfunction_ ๐ โpy_ spike_ sync - __
pyfunction_ ๐ โpy_ spike_ sync_ profile - __
pyfunction_ ๐ โpy_ spike_ time_ tiling_ coefficient - __
pyfunction_ ๐ โpy_ spike_ times - __
pyfunction_ ๐ โpy_ spike_ train_ coherence - __
pyfunction_ ๐ โpy_ spike_ train_ entropy - __
pyfunction_ ๐ โpy_ spike_ train_ order - __
pyfunction_ ๐ โpy_ spike_ train_ pca - __
pyfunction_ ๐ โpy_ spike_ triggered_ average - __
pyfunction_ ๐ โpy_ spike_ triggered_ covariance - __
pyfunction_ ๐ โpy_ stimulus_ specific_ information - __
pyfunction_ ๐ โpy_ surrogate_ bin_ shuffling - __
pyfunction_ ๐ โpy_ surrogate_ dither - __
pyfunction_ ๐ โpy_ surrogate_ isi_ shuffle - __
pyfunction_ ๐ โpy_ surrogate_ joint_ isi - __
pyfunction_ ๐ โpy_ surrogate_ spike_ train_ shifting - __
pyfunction_ ๐ โpy_ synfire_ chain_ detection - __
pyfunction_ ๐ โpy_ tokenise_ spikes - __
pyfunction_ ๐ โpy_ transfer_ entropy - __
pyfunction_ ๐ โpy_ tuning_ curve - __
pyfunction_ ๐ โpy_ unitary_ events - __
pyfunction_ ๐ โpy_ van_ rossum_ distance - __
pyfunction_ ๐ โpy_ victor_ purpura_ distance - __
pyfunction_ ๐ โpy_ waveform_ amplitude - __
pyfunction_ ๐ โpy_ waveform_ halfwidth - __
pyfunction_ ๐ โpy_ waveform_ pt_ ratio - __
pyfunction_ ๐ โpy_ waveform_ recovery_ slope - __
pyfunction_ ๐ โpy_ waveform_ repolarization_ slope - __
pyfunction_ ๐ โpy_ waveform_ width - py_
adaptive_ ๐spike_ distance - py_
amplitude_ ๐cutoff - py_
approximate_ ๐entropy - py_
autocorrelation_ ๐time - py_
bayesian_ ๐decode - py_
bin_ ๐spike_ train - py_
burst_ ๐detection - py_
cell_ ๐assembly_ detection - py_
change_ ๐point_ detection - py_
coincidence_ ๐index - py_
compound_ ๐poisson_ process - py_
conditional_ ๐granger_ causality - py_
conditional_ ๐intensity - py_
covariance_ ๐matrix - py_
cross_ ๐correlation - py_
cubic_ ๐higher_ order - py_cv2 ๐
- py_
cv_ ๐isi - py_
d_ ๐prime - py_
demixed_ ๐components - py_
demixed_ ๐pca - py_
directed_ ๐transfer_ function - py_
drift_ ๐metric - py_
earth_ ๐movers_ distance - py_
event_ ๐synchronization - py_
factor_ ๐analysis - py_
factor_ ๐loadings - py_
fano_ ๐factor - py_
firing_ ๐rate - py_
first_ ๐spike_ latency - py_
functional_ ๐connectivity - py_
gamma_ ๐process - py_
gaussian_ ๐attention - py_gpfa ๐
- py_
gpfa_ ๐em - Run the GPFA EM loop from a caller-supplied deterministic initialisation.
- py_
gpfa_ ๐transform - py_
homogeneous_ ๐poisson - py_
hunter_ ๐milton_ similarity - py_
hurst_ ๐exponent - py_
infonce_ ๐loss - py_
instantaneous_ ๐rate - py_isi ๐
- py_
isi_ ๐distance - py_
isi_ ๐hazard_ function - py_
isi_ ๐profile - py_
isi_ ๐survivor_ function - py_
isi_ ๐violation_ rate - py_
isolation_ ๐distance - py_
joint_ ๐psth - py_
kozachenko_ ๐leonenko_ mi - py_
l_ ๐ratio - py_
lempel_ ๐ziv_ complexity - py_
linear_ ๐discriminant_ decode - py_
local_ ๐variation - py_
maximum_ ๐likelihood_ decode - py_
multi_ ๐neuron_ victor_ purpura - py_
mutual_ ๐information - py_
naive_ ๐bayes_ decode - py_
nn_ ๐hit_ rate - py_
noise_ ๐correlation - py_
noise_ ๐entropy - py_
pairwise_ ๐correlation - py_
pairwise_ ๐granger_ causality - py_
partial_ ๐directed_ coherence - py_
pca_ ๐components - py_
permutation_ ๐entropy - py_
phase_ ๐locking_ value - py_
place_ ๐field_ detection - py_
population_ ๐vector_ decode - py_
power_ ๐spectrum - py_
presence_ ๐ratio - py_psth ๐
- py_
renewal_ ๐density - py_
response_ ๐onset - py_
sample_ ๐entropy - py_
scaled_ ๐dot_ product_ attention - py_
schreiber_ ๐similarity - py_
signal_ ๐correlation - py_
silhouette_ ๐score - py_
sinusoidal_ ๐position_ encode - py_snr ๐
- py_
spade_ ๐detect - py_
spatial_ ๐information - py_
spectral_ ๐granger_ causality - py_
spike_ ๐count - py_
spike_ ๐count_ covariance - py_
spike_ ๐directionality - py_
spike_ ๐distance - py_
spike_ ๐distance_ matrix - py_
spike_ ๐field_ coherence - py_
spike_ ๐phase_ histogram - py_
spike_ ๐profile - py_
spike_ ๐sync - py_
spike_ ๐sync_ profile - py_
spike_ ๐time_ tiling_ coefficient - py_
spike_ ๐times - py_
spike_ ๐train_ coherence - py_
spike_ ๐train_ entropy - py_
spike_ ๐train_ order - py_
spike_ ๐train_ pca - py_
spike_ ๐triggered_ average - py_
spike_ ๐triggered_ covariance - py_
stimulus_ ๐specific_ information - py_
surrogate_ ๐bin_ shuffling - py_
surrogate_ ๐dither - py_
surrogate_ ๐isi_ shuffle - py_
surrogate_ ๐joint_ isi - py_
surrogate_ ๐spike_ train_ shifting - py_
synfire_ ๐chain_ detection - py_
tokenise_ ๐spikes - py_
transfer_ ๐entropy - py_
tuning_ ๐curve - py_
unitary_ ๐events - py_
van_ ๐rossum_ distance - py_
victor_ ๐purpura_ distance - py_
waveform_ ๐amplitude - py_
waveform_ ๐halfwidth - py_
waveform_ ๐pt_ ratio - py_
waveform_ ๐recovery_ slope - py_
waveform_ ๐repolarization_ slope - py_
waveform_ ๐width - register ๐
- Register the analysis functions on the Python extension module.