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Module biophysical

Module biophysical 

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Compatibility facade for biophysical and conductance-based neuron models.

Each model owns its implementation and tests in a bounded child module while the historical public re-exports and safe_rate path remain stable.

Modulesยง

av_ron_cardiac ๐Ÿ”’
Av-Ron cardiac-ganglion Type III burster dynamics.
bertram_phantom ๐Ÿ”’
Bertram dual-slow-potassium phantom-burster dynamics.
connor_stevens ๐Ÿ”’
Connor-Stevens A-type potassium-current neuron dynamics.
de_schutter_purkinje ๐Ÿ”’
De Schutter-Bower Purkinje-cell conductance dynamics.
destexhe_thalamic ๐Ÿ”’
Destexhe thalamocortical relay-neuron dynamics.
durstewitz_dopamine ๐Ÿ”’
Durstewitz prefrontal-cortex neuron dynamics with D1 modulation.
gif_population ๐Ÿ”’
Seeded escape-rate generalized integrate-and-fire population dynamics.
glif ๐Ÿ”’
Allen GLIF5 threshold-adaptation and after-spike-current dynamics.
golomb_fs ๐Ÿ”’
Golomb Kv3-enabled fast-spiking interneuron dynamics.
hill_tononi ๐Ÿ”’
Hill-Tononi thalamocortical sleep and wake dynamics.
hodgkin_huxley ๐Ÿ”’
Hodgkin-Huxley 1952 conductance-based neuron dynamics.
huber_braun ๐Ÿ”’
Huber-Braun temperature-sensitive cold-receptor dynamics.
mainen_sejnowski ๐Ÿ”’
Mainen-Sejnowski two-compartment soma and axon dynamics.
mihalas_niebur ๐Ÿ”’
Mihalas-Niebur generalized integrate-and-fire dynamics.
plant_r15 ๐Ÿ”’
Plant R15 Aplysia parabolic-burster dynamics.
pospischil ๐Ÿ”’
Pospischil minimal conductance model for cortical cell types.
prescott ๐Ÿ”’
Prescott conductance model for Type I, II, and III excitability.
traub_miles ๐Ÿ”’
Traub-Miles hippocampal CA3 pyramidal neuron dynamics.
wang_buzsaki ๐Ÿ”’
Wang-Buzsaki fast-spiking interneuron dynamics.
yamada ๐Ÿ”’
Yamada subcritical Hopf-burster dynamics.

Structsยง

AvRonCardiacNeuron
Av-Ron cardiac ganglion โ€” Type III burster. Av-Ron et al. 1991.
BertramPhantomBurster
Bertram phantom burster โ€” dual slow K for phantom bursting. Bertram et al. 2000.
ConnorStevensNeuron
Connor-Stevens โ€” A-type K current for delay tuning. Connor et al. 1977.
DeSchutterPurkinjeNeuron
De Schutter-Bower Purkinje cell โ€” Ca-dependent K. De Schutter & Bower 1994.
DestexheThalamicNeuron
Destexhe thalamocortical relay neuron with T-current. Destexhe et al. 1993.
DurstewitzDopamineNeuron
Durstewitz PFC neuron with D1 dopamine modulation. Durstewitz et al. 2000.
GIFPopulationNeuron
GIF population โ€” escape-rate generalized IF. Mensi et al. 2012.
GLIFNeuron
Allen GLIF5 โ€” LIF + threshold adaptation + after-spike currents.
GolombFSNeuron
Golomb fast-spiking interneuron with Kv3. Golomb et al. 2007.
HillTononiNeuron
Hill-Tononi 2005 โ€” thalamocortical sleep/wake with Na-dependent K.
HodgkinHuxleyNeuron
Hodgkin-Huxley 1952 โ€” 4-ODE ion channel model.
HuberBraunNeuron
Huber-Braun โ€” temperature-sensitive cold receptor. Braun et al. 1998.
MainenSejnowskiNeuron
Mainen-Sejnowski โ€” two-compartment (soma + axon). Mainen & Sejnowski 1996.
MihalasNieburNeuron
Mihalas-Niebur 2009 โ€” generalised IF capturing 20 spike patterns.
PlantR15Neuron
Plant R15 โ€” Aplysia parabolic burster. Plant & Kim 1976.
PospischilNeuron
Pospischil โ€” minimal HH for 5 cortical cell types. Pospischil et al. 2008.
PrescottNeuron
Prescott 2008 โ€” Type I/II/III excitability tuning via M-current.
TraubMilesNeuron
Traub-Miles โ€” hippocampal CA3 pyramidal neuron with M-current.
WangBuzsakiNeuron
Wang-Buzsaki โ€” fast-spiking GABAergic interneuron. Wang & Buzsรกki 1996.
YamadaNeuron
Yamada 1989 โ€” subcritical Hopf burster.

Functionsยง

safe_rate